Re: [DIYbio] Favorite Tools for Aligning Multiple Sequences

>> Awesome, this is very simple to use! Do you have anything for aligning
>> multiple similar sequences of several similar organisms by any chance?

ClustalW
EMBL has a web interface for the algorithm here:
http://www.ebi.ac.uk/Tools/msa/clustalw2/

Also, BioPerl and BioPython both have a clustalw module.
http://doc.bioperl.org/releases/bioperl-1.0.1/Bio/Tools/Run/Alignment/Clustalw.html
http://biopython.org/DIST/docs/api/Bio.AlignIO-module.html
It's a fairly common algorithm, so any decent bioinformatics package
is likely to have it.


-cory

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