I was doing some tests with ANNOVAR and SeqMule, therefore created a few Python scripts to filter .csv files. I've done some NLP and biomedical text mining/ontologies. I played around with graphs using Cytoscape and Gephi. I'm currently working on a webapp with node.js for my company and do some research on node.js + distributed computing and CDNs. I would be very interested into proteomic networks, epigenetic regulatory networks, transcriptomics, etc! I really like graphs, could this be helpfull? Just let me know something you need and I'll try on it. Just created a github where I will upload things related to bioinformatics.
On Friday, February 26, 2016 at 7:04:38 AM UTC-3, Ravasz wrote:
-- On Friday, February 26, 2016 at 7:04:38 AM UTC-3, Ravasz wrote:
Hi David,
What kind of project would you be interested in? Also, do you have a github page or something alike that shows what type of programs you like to write?
I always have a few unused bioinformatic projects up my sleeve for students. My focus is on proteomics and RNA sequencing of T cells. If you are interested in this, let me know. I am a biologist first, and tend to dabble with coding (python and R) and for more complex code I could often use some proper programming support.
Mate
On Friday, 26 February 2016 00:03:21 UTC, David Zehnter wrote:I've spent a lot of spare time studying biomedical concepts like (epi)genetics, molecular biology, disease genotypes and phenotypes, etc. As a volunteer for a neurogenetic research group I have participated on an exome analysis pipeline (variant calling and annotation). I have a modest understanding of statistics and machine learning, I'm into it. I work 30 hours a week as a Node.js and Python developer for a small company that has nothing to do with bioinformatics. Node.js seems to become popular for bioinformatics, there are many projects now. And I love Python! I'm a DIYbio believer with a strong autodidact and non-academic attitude. I'm currently looking for a new volunteering project. If you are a bioinformatician who could need some extra support, please get in touch with me. I'm willing to spend about 10-20 hours a week to help you getting results while you guide me (not teach me) and well, be a kind of supervisor. It could be anything related to research, software development, web apps .. whatever. Anyone with similar experience? I found this article motivating. Please share, thanks!
-- You received this message because you are subscribed to the Google Groups DIYbio group. To post to this group, send email to diybio@googlegroups.com. To unsubscribe from this group, send email to diybio+unsubscribe@googlegroups.com. For more options, visit this group at https://groups.google.com/d/forum/diybio?hl=en
Learn more at www.diybio.org
---
You received this message because you are subscribed to the Google Groups "DIYbio" group.
To unsubscribe from this group and stop receiving emails from it, send an email to diybio+unsubscribe@googlegroups.com.
To post to this group, send email to diybio@googlegroups.com.
Visit this group at https://groups.google.com/group/diybio.
To view this discussion on the web visit https://groups.google.com/d/msgid/diybio/3cada845-8ddd-4b31-bcfa-4d5838717514%40googlegroups.com.
For more options, visit https://groups.google.com/d/optout.
0 comments:
Post a Comment