Re: [DIYbio] Some ideas for entrepreneurs

Gut bacteria already produce short chain fatty acids (acetate, propionate, and butyrate), which feed the host animal, and other gut microbes. Bacteria-produced butyrate is, in fact, the major nutrient for the cells lining the large intestine. However, these short chain fatty acids are produced by anaerobes, not the lactobacilli I was thinking about. I only mention them as an existence proof that fat-producing bacteria already exist in the gut.

Producing algae as a feedstock for chickens is already done, and is one of the reasons omega-3 rich eggs are more expensive. Having the chickens produce it in their crops from ordinary cheap food eliminates this extra step, and all of the plant and equipment needed to grow the algae. And since the probiotic bacteria are also only used as a feedstock, there is no regulation. Anyone can sell probiotic capsules without U.S. government interference, as long as they make no medical claims. And feedstocks for chickens are even more loosely regulated than human supplements.

I am not saying it will be an easy thing to do, however. Moving an entire pathway from one critter to another is a lot different than just adding a gene to a plasmid. But getting this group thinking about applications like this can generate other ideas, even if no one here can do the job.

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On Fri, Dec 9, 2016 at 1:02 PM, Dennis Oleksyuk <dennis@oleksyuk.me> wrote:

It probably would be much easier to modify algae to overproduce omega 3. It is also easier to get government approval because it is only used as a feedstock.

Someone correct me if I'm wrong, but making bacteria to produce any type of fat will require a lot of extra energy. Therefore it will experience high evolutionary pressure to disable that gene. Plus it will become a food for other bacteria.


On Fri, Dec 9, 2016, 9:55 AM Simon Quellen Field <sfield@scitoys.com> wrote:
I raise chickens.
Some of them are Aracanas and Americanas, which lay eggs that are pale blue or green.
We joke about eating the green eggs with ham.

Chickens have a sac at the beginning of the digestive tract called a crop, where ruminant-like bacteria (lactobacilli, coliforms, and streptococci) help to digest food before it gets to the acidic stomach. At the other end of the digestive tract, they also have a caeca, where anaerobes live, just like in humans and cows.

Chickens only have one exit shared between the digestive system and the reproductive system. Thus the eggs pass through the same exit that the anaerobic microbes do.

Suppose someone were to feed the chicken some probiotic bacteria that expressed green or red fluorescent protein attached to a protein they excrete, so it attaches to the eggshell as it passes through. Now we get fluorescent green or red eggs.

The second idea is more practical, if less fun. Chickens are often fed foods high in omega-3 fatty acids, so that the eggs will also be rich in these beneficial fats. The sources of these fats are algae, which have the mechanisms for making them, which is why our main sources of DHA and EPA are fish oils, since the primary food source is algae.

Suppose someone engineered probiotic lactobacilli with a pathway for creating omega-3 fats stolen from marine algae, and we could feed this to chickens, so they produce their own omega-3 fats in their crop? This could dramatically lower the cost of omega-3 rich eggs, since the fats would not have to be added to the feed. It may also be possible to find a way to allow the original algae to grow in the crop, either by genetic modification or by changing the crop ecology so that other commensal organisms provide the nutrients the algae need to grow in the dark.

The nice thing about both of these modifications is that the chicken is not modified, and what we are feeding them has a friendly name -- "probiotics". These two things make it easier to market the resulting product.

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