[DIYbio] Theoretical on Miniprep mechanics

Hi everyone! 


I was wondering the following: 

During a miniprep, you first lyse the cells with sdoium hydroxide and then neutralize everything with aetic acid. 

Now a question came up that I never thought about: Will this not denature the DNA? During the high pH of NaOH there will be a lot of OH- groups floating around interacting with hydrogen bonds? 
Will the DNA not be partly or fully single-stranded then? 
 
Will it fully reaneal very fast, or not? will there be non-covalently joined and partly overlapping plasmid strands? 

Not that it really matters for routine applications  but I find it very interesting and would be interested if anyone has thought about this, knows literature about it or knows the right keywords. 

Thanks! 

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