ClustalW is probably the way to go. BioEdit is a good program that you can use
On Wednesday, June 27, 2012 2:24:08 AM UTC-5, cory....@gmail.com wrote:
>> Awesome, this is very simple to use! Do you have anything for aligning--
>> multiple similar sequences of several similar organisms by any chance?
ClustalW
EMBL has a web interface for the algorithm here:
http://www.ebi.ac.uk/Tools/msa/clustalw2/
Also, BioPerl and BioPython both have a clustalw module.
http://doc.bioperl.org/releases/bioperl-1.0.1/Bio/ Tools/Run/Alignment/Clustalw. html
http://biopython.org/DIST/docs/api/Bio.AlignIO-module. html
It's a fairly common algorithm, so any decent bioinformatics package
is likely to have it.
-cory
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