I've tried this procedure a few times, and as yet I've not been able to see any bands in the samples channels that we extracted from the tomatoes.
Any suggestions on what I am doing wrong, because I'm starting to pull my hair out ;-)
However after redissolving this in TE buffer, there is nothing showing in the channel when run on a gel. (The ladder lane is showing bands nicely. Also previously extracted DNA using a kit is showing in a positive control lane)
https://docs.google.com/document/d/1mXuL7l6o13a20EKw2KaahHs1RR04KdYhqwDXSU2oQgo/edit?usp=sharing
Extraction of DNA from tomatoes for running in 2% agarose/EtBr gel
86 g tomato
100 mL deionized water
5 mL detergent
25g salt
12g Sodium citrate
ice cold isopropanol
5 mL TE buffer
loading dye
ladder
extraction
1) chop and pulp tomato and put in sandwich bag
2) add 100 mL deionized water, 5 mL detergent, 25g salt to bag
3) squash and mix tomato in bag and leave for 20 mins
4) strain liquid through gauze into test tube, fill to about ¼
5) gently fill the test tube to ¾ full with ice cold isopropanol and leave for 15 minutes
6) tried a few variations here; (none of which worked)
i) isolate the pellet of red precipitate that floated to the top
redissolve in TE buffer and add 1/5 loading dye to make a 1/6 dilution
ii) spin down a sample from the white cloudy stuff that has formed at the top of the alcohol layer
redissolve in TE buffer and add 1/5 loading dye to make a 1/6 dilution
7) run the extracted DNA with loading dye;
8) we are seeing the ladder lanes showing up in the UV, and the loading dye is running, but the sample lanes are completely empty.
There is a very faint suggestion of a glow in the well, but hardly anything
What are we doing wrong?
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