Re: [DIYbio] Re: Standardized DIYbio report format? WAS: Endophyte isolation and first successful sequencing

Dakota, thanks for your input. There is definitely a long list of features we'd like to add, as you might imagine. Naturally, the direction of our site will depend entirely on how the community embraces it. We're anticipating two main areas of focus: open sharing and private project management. Ideally, we'd like to support both, and likely we will down the line. But first, because we want to support the open nature of the DIYBio community, we decided to focus on just making it really easy for users to share data. So we made big buttons for "Create a Project" and quick, minimal upload and view features. Moving ahead, the next challenge is to focus on making that data beautiful. There's a lot of potential in viewing data in an interactive format. Our design experience is limited right now, but we're learning quickly.

As you said, there's a lot of project management tools out there for scientists already. Right now there is the option to make a project private and you can use Nucleus solely for keeping track of projects. Again, we wanted to focus on sharing at first, so more robust project management features are still to come, for both public and private projects. For example, we're working on integrating Markdown and LaTex support for a dedicated protocol tab to accompany the data.

When you get back to your computer, I hope you'll upload some data and get to try it out in more detail. Thanks!


On Friday, April 4, 2014 7:10:32 PM UTC-4, Dakota wrote:

I'm on my  phone now so cant be really type well but, I guess I'd approach it from a scientists perspwctive.  There are 100 project management platforms out thetr.  Make yours unique and geared towards data, pictures and graphs, and maybe a lab notebook type setup.  Idk.  It'd also be cool to add a feature that would allow people to get points or a thumbs up type of recognition for having a protocol that works.    In science repeatability is key, so a way to give a tip of the hat that someone has used your experiment and it worked would be cool

On Apr 4, 2014 7:03 PM, "Dakota Hamill" <dko...@gmail.com> wrote:

Ya i made one just to see what it looks like.  The idea is great no doubt, but I guess the final product remains to be seen.  What features are you hoping to add?

On Apr 4, 2014 5:59 PM, "Nathan McCorkle" <nmz...@gmail.com> wrote:
It would be nice if your team could showcase at least one example
Project, to expose all the features of the site for others.

On Fri, Apr 4, 2014 at 2:45 PM, David Taffany <david.a...@gmail.com> wrote:
> Nathan,
>
> Yes, embarrassingly, you are correct! We're in that very early Catch-22
> stage where in order to recruit users, we first need some users. We're
> looking for some enterprising beta testers to be the first ones on there and
> set the example. If you've got a test project you'd like to post, I'd be
> happy to help you through the process and would love your feedback.
>
> David
>
>
> On Friday, April 4, 2014 5:24:19 PM UTC-4, Nathan McCorkle wrote:
>>
>> David, its hard for me to tell how good it is, as there doesn't seem
>> to be a well prepared example Project (they all seem like development
>> test projects).
>>
>> On Fri, Apr 4, 2014 at 1:56 PM, David Taffany <david.a...@gmail.com>
>> wrote:
>> > Hi All,
>> >
>> > It's been a while but my team and I are still working on our site,
>> > Nucleus
>> > (www.wearenucleus.com), as a home for DIYBio on the web. Here's the
>> > idea:
>> > DIYBiologists post about their experiments, and others can view the
>> > results
>> > and comment, critique, and give "kudos" that help the scientist's
>> > reputation
>> > on the site.
>> >
>> > We think there's a huge benefit to bringing DIYBio projects under one
>> > umbrella, rather than sharing only on community lab wikis or personal
>> > blogs.
>> > We hope Nucleus can be that umbrella, allowing for a network effect that
>> > will bring citizen science projects greater discoverability along with
>> > greater reputation and collaboration opportunities to the scientist.
>> >
>> > The team is just myself and two others. Nucleus has no affiliations with
>> > any
>> > larger institutions. We're building it because we really believe in
>> > citizen
>> > science and its potential to change science at large. We're hoping
>> > Nucleus
>> > can help all of you work together more easily. We'd love for people to
>> > check
>> > it out, and please feel free to reach out with your thoughts at david
>> > -at-
>> > wearenucleus -dot- com. Thanks!
>> >
>> > David
>> >
>> > On Tuesday, August 13, 2013 9:53:43 AM UTC-4, phillyj wrote:
>> >>
>> >> On Wed, Aug 7, 2013 at 10:48 AM, Dakota Hamill <dko...@gmail.com>
>> >> wrote:
>> >> >
>> >> > Ben: I understand what you're saying, there are times I read amazing
>> >> > articles or posts by people on how to build this or that and when I
>> >> > get
>> >> > to
>> >> > the end, I say to myself, where is all the information and materials
>> >> > list!
>> >> > I've been quite busy during the week and have been writing these
>> >> > quick
>> >> > posts
>> >> > at night.  There is a section on the website that we had the
>> >> > intention
>> >> > (and
>> >> > still do) of filling with more detailed protocols.  Since not
>> >> > everyone
>> >> > is
>> >> > entirely interested (like casual interested readers perhaps) in the
>> >> > exact
>> >> > buffer recipes, perhaps what I'll do is write a detailed reference
>> >> > section
>> >>
>> >> Can we get some sort of standard way to report the findings in the
>> >> DIYbio community? By standard, I mean, a specific file format (txt,
>> >> pdf, etc) with a specific template. The template should make it easy
>> >> to list materials, methods, results, conclusion, references. It should
>> >> be like a regular journal article except easily read by anyone and
>> >> easy to create [the report] by anyone.
>> >>
>> >> And a place that accepts them as a repository would be nice, to keep
>> >> track of all the findings by people all over the world. Something like
>> >> github but I'm not sure what the general sentiment on github is. I
>> >> know Cathal uses it for his protocols.
>> >
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>>
>>
>> --
>> -Nathan
>
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