[DIYbio] Re: Bioinformatic tool -> berberine binding to enzymes

I think I found one easy to use. Just gotta find the DB files.

http://hexserver.loria.fr/








On Wednesday, August 6, 2014 3:27:00 PM UTC+2, Mega [Andreas Stuermer] wrote:

Hi! 

Could use some help with the following: 

One mode of action is that berberine and derivates activate cbl-ubiquitin ligase. Now I was told to identify structures where berberine binds to. So maybe to cbl, or some upstream protein.

I don't know of any bioinformatic tool that is advanced enough to solve this. Does anyone know of one? 

Best,

Andreas  

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