Hi Nico,
The cheapest way to get going would be to make a large insert shotgun library. You'll need access to live plant tissue for that; if you don't have access to live plant tissue, you can make a small insert library. That would be followed by some plasmid preps (not expensive), and some end-sequencing (a little expensive).
I'd be happy to help you through the project.
To start with, do you have access to live tissue? Is this species wild-collected or cultivated?
Stacy
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