Re: [DIYbio] Re: biopython on windows

I love the habitual way you throw the "&" in at the end.

Anyway, I think our OP isn't even using Linux so awk, crazy black magic
even to most Linux users, is out of the question. :)

On 26/03/15 15:24, Tom Randall wrote:
> Here is an awk that should do it:
>
> awk 'BEGIN{P=1}{if(P==1||P==2){gsub(/^[@]/,">");print}; if(P==4)P=0;
> P++}'infile.fastq> outfile.fasta&
>
> On Wednesday, March 25, 2015 at 5:58:57 PM UTC-4, phillyj wrote:
>
> Hi guys,
> I need the help of the software experts. I am not very familiar with
> installing python and it's modules on windows. I need Biopython to
> run a FASTQ to FASTA conversion script. I installed Python 2.7 but I
> can't install the NumPy module needed for Biopython. I get an error
> (can't remember exact), but I think it has to do with the C compiler
> needed to install the module.
>
> So, I found that using pip, you can install the .whl file. But I am
> not sure which versions of which modules work together. So can
> anyone tell me how to do get this up and running, like which python,
> numpy, and biopython versions to get and how to install them with
> the least trouble.
>
> Thanks
> --
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> -Marco Antonio Dominis
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