Re: [DIYbio] Re: biopython on windows

I love the habitual way you throw the "&" in at the end.

Anyway, I think our OP isn't even using Linux so awk, crazy black magic even to most Linux users, is out of the question. :)

On 26/03/15 15:24, Tom Randall wrote:

Here is an awk that should do it:

awk 'BEGIN{P=1}{if(P==1||P==2){gsub(/^[@]/,">");print}; if(P==4)P=0;
P++}'infile.fastq> outfile.fasta&

On Wednesday, March 25, 2015 at 5:58:57 PM UTC-4, phillyj wrote:

    Hi guys,
    I need the help of the software experts. I am not very familiar with
    installing python and it's modules on windows. I need Biopython to
    run a FASTQ to FASTA conversion script. I installed Python 2.7 but I
    can't install the NumPy module needed for Biopython. I get an error
    (can't remember exact), but I think it has to do with the C compiler
    needed to install the module.

    So, I found that using pip, you can install the .whl file. But I am
    not sure which versions of which modules work together. So can
    anyone tell me how to do get this up and running, like which python,
    numpy, and biopython versions to get and how to install them with
    the least trouble.

    Thanks
    --
    In necessariis unitas, in dubiis libertas, in omnibus caritas.
    -Marco Antonio Dominis

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