Re: [DIYbio] BLAST query analysis

On Thu, Mar 15, 2012 at 8:14 AM, Nathan McCorkle <nmz787@gmail.com> wrote:
> Do you know Perl? IMO Perl is much clunkier than Python (which is easy
> to use, and IMO is the best get-shit-done language)
>
I got the basics of perl down and will have to review since its been a while.

I woke up today with some psudeocode in my head:
[1] sort lines
[2] let query line be stored in a list
[3] if next line is different from previous line, store in list
[3A] compare next line with previous; if similar, add to a counter and
discard that line
[3B] if next line is different, store in list and loop back to [3A]

Not sure how fast or easy it is to implement. Will have to work on it some more.

> Its also pretty easy to build a web-app using python and Django (which
> is also very useful, and not too hard)
>
Would be nice to learn.

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