For what it's worth, I decided to go with 3 American Gut samples, and one uBiome for comparison.
Like Jason, I know the people involved in American Gut, and I think they're probably the top team in the world to run this kind of project. Don't really know the uBiome team, but as I understand they're a for-profit startup - make of that what you will.
Note that American Gut now also does international samples (they had to wait for approval from their IRB), and they've added the ability to add *any* kind of body site or surfaces in your home.
Patrik
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