Re: [DIYbio] Re: Protein Shop Help!

What is the password on the centos/proteinbox vm?  On 9 Oct 2013 14:14, "John Dohnal" <johnhdohnal@aol.com> wrote:    

Thank you Tim! This was exactly what I needed.  I will give it a try this  weekend.  Best,  John    On Tuesday, October 8, 2013 5:32:53 PM UTC-4, wgh...@gmail.com wrote:  

  Hi John,    Here are the steps you need to get proteinshop running on any platform:    1.  Download virtual box from here: https://www.virtualbox.**  org/wiki/Downloads <https://www.virtualbox.org/wiki/Downloads>  2.  Download the .ova from www.graysonconsutling.biz  3.  Open the .ova in virtual box    It will boot up the linux virtual machine and protein shop will  automatically start with the ubiquitin protein loaded.    -Tim    P.S.    This is meant to be very easy! :>      On Tue, Oct 8, 2013 at 9:37 AM, John Dohnal <johnh...@aol.com> wrote:    

Hi Tim,    Thank you and everyone who contributed to this thread.  Unfortunately, I  had no idea what any of you were talking about lol!  I appreciate you  taking the time to get it working.  I'm still not sure how to use the  information you posted on your website.  For instance, I'm not sure where  to run the commands for doing the change directory or the make.  Never used  Linux before, so don't even know where to start.  I need "Idiot's Guide to  Running Programs in Linux".    Thanks,  John      On Thursday, October 3, 2013 5:43:24 PM UTC-4, wgh...@gmail.com wrote:    

Hi John,    I am quite interested in assisting you in any way you need.  I am a  computer scientist that has studied synthetic biology for a number of  years.  You can download and run protein shop effortlessly using the  virtual appliance I created here:    http://www.graysonconsulting.**b**iz/<http://www.graysonconsulting.biz/>    All tools to run this virtual appliance are free.  All you have to do  is download virtual box and .ova from that website and start the ova  appliance.  Proteinshop will come up automatically with the ubiquitin  protein.  Let me know if you have questions :>    -Tim    P.S.    Meredith said she wanted to create a test suite and what have you to  make this fully functional.  I am happy to assist in that effort!   Meredith, please put on your supergirl costume and use me like a tool in  your tool box :>      On Thu, Oct 3, 2013 at 8:36 AM, John Dohnal <johnh...@aol.com> wrote:    

Is anyone still working on this? Or should I try the other options for  protein manipulation?  Thanks,  John      On Thursday, September 19, 2013 8:46:59 AM UTC-4, John Dohnal wrote:  

  I have never used a Linux OS before, but I downloaded the latest  version of Ubuntu in order to run Protein Shop.  I downloaded the latest  version of Protein Shop, but I don't know how to start it.  I know nothing  about using Linux, so any explicit, basic instructions would be most  helpful.  In the readme file, it mentions some other files that may need to  be installed, but I don't even know where to begin. Please help!    Thanks,  John    

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