Re: [DIYbio] Re: Standardized DIYbio report format? WAS: Endophyte isolation and first successful sequencing

also version controlled text (at least), ability to fork or transfer
Project ownership (experiments usually build on previous protocols).

On Fri, Apr 4, 2014 at 4:10 PM, Dakota Hamill <dkotes@gmail.com> wrote:
> I'm on my phone now so cant be really type well but, I guess I'd approach
> it from a scientists perspwctive. There are 100 project management
> platforms out thetr. Make yours unique and geared towards data, pictures
> and graphs, and maybe a lab notebook type setup. Idk. It'd also be cool to
> add a feature that would allow people to get points or a thumbs up type of
> recognition for having a protocol that works. In science repeatability is
> key, so a way to give a tip of the hat that someone has used your experiment
> and it worked would be cool
>
> On Apr 4, 2014 7:03 PM, "Dakota Hamill" <dkotes@gmail.com> wrote:
>>
>> Ya i made one just to see what it looks like. The idea is great no doubt,
>> but I guess the final product remains to be seen. What features are you
>> hoping to add?
>>
>> On Apr 4, 2014 5:59 PM, "Nathan McCorkle" <nmz787@gmail.com> wrote:
>>>
>>> It would be nice if your team could showcase at least one example
>>> Project, to expose all the features of the site for others.
>>>
>>> On Fri, Apr 4, 2014 at 2:45 PM, David Taffany <david.a.taffany@gmail.com>
>>> wrote:
>>> > Nathan,
>>> >
>>> > Yes, embarrassingly, you are correct! We're in that very early Catch-22
>>> > stage where in order to recruit users, we first need some users. We're
>>> > looking for some enterprising beta testers to be the first ones on
>>> > there and
>>> > set the example. If you've got a test project you'd like to post, I'd
>>> > be
>>> > happy to help you through the process and would love your feedback.
>>> >
>>> > David
>>> >
>>> >
>>> > On Friday, April 4, 2014 5:24:19 PM UTC-4, Nathan McCorkle wrote:
>>> >>
>>> >> David, its hard for me to tell how good it is, as there doesn't seem
>>> >> to be a well prepared example Project (they all seem like development
>>> >> test projects).
>>> >>
>>> >> On Fri, Apr 4, 2014 at 1:56 PM, David Taffany <david.a...@gmail.com>
>>> >> wrote:
>>> >> > Hi All,
>>> >> >
>>> >> > It's been a while but my team and I are still working on our site,
>>> >> > Nucleus
>>> >> > (www.wearenucleus.com), as a home for DIYBio on the web. Here's the
>>> >> > idea:
>>> >> > DIYBiologists post about their experiments, and others can view the
>>> >> > results
>>> >> > and comment, critique, and give "kudos" that help the scientist's
>>> >> > reputation
>>> >> > on the site.
>>> >> >
>>> >> > We think there's a huge benefit to bringing DIYBio projects under
>>> >> > one
>>> >> > umbrella, rather than sharing only on community lab wikis or
>>> >> > personal
>>> >> > blogs.
>>> >> > We hope Nucleus can be that umbrella, allowing for a network effect
>>> >> > that
>>> >> > will bring citizen science projects greater discoverability along
>>> >> > with
>>> >> > greater reputation and collaboration opportunities to the scientist.
>>> >> >
>>> >> > The team is just myself and two others. Nucleus has no affiliations
>>> >> > with
>>> >> > any
>>> >> > larger institutions. We're building it because we really believe in
>>> >> > citizen
>>> >> > science and its potential to change science at large. We're hoping
>>> >> > Nucleus
>>> >> > can help all of you work together more easily. We'd love for people
>>> >> > to
>>> >> > check
>>> >> > it out, and please feel free to reach out with your thoughts at
>>> >> > david
>>> >> > -at-
>>> >> > wearenucleus -dot- com. Thanks!
>>> >> >
>>> >> > David
>>> >> >
>>> >> > On Tuesday, August 13, 2013 9:53:43 AM UTC-4, phillyj wrote:
>>> >> >>
>>> >> >> On Wed, Aug 7, 2013 at 10:48 AM, Dakota Hamill <dko...@gmail.com>
>>> >> >> wrote:
>>> >> >> >
>>> >> >> > Ben: I understand what you're saying, there are times I read
>>> >> >> > amazing
>>> >> >> > articles or posts by people on how to build this or that and when
>>> >> >> > I
>>> >> >> > get
>>> >> >> > to
>>> >> >> > the end, I say to myself, where is all the information and
>>> >> >> > materials
>>> >> >> > list!
>>> >> >> > I've been quite busy during the week and have been writing these
>>> >> >> > quick
>>> >> >> > posts
>>> >> >> > at night. There is a section on the website that we had the
>>> >> >> > intention
>>> >> >> > (and
>>> >> >> > still do) of filling with more detailed protocols. Since not
>>> >> >> > everyone
>>> >> >> > is
>>> >> >> > entirely interested (like casual interested readers perhaps) in
>>> >> >> > the
>>> >> >> > exact
>>> >> >> > buffer recipes, perhaps what I'll do is write a detailed
>>> >> >> > reference
>>> >> >> > section
>>> >> >>
>>> >> >> Can we get some sort of standard way to report the findings in the
>>> >> >> DIYbio community? By standard, I mean, a specific file format (txt,
>>> >> >> pdf, etc) with a specific template. The template should make it
>>> >> >> easy
>>> >> >> to list materials, methods, results, conclusion, references. It
>>> >> >> should
>>> >> >> be like a regular journal article except easily read by anyone and
>>> >> >> easy to create [the report] by anyone.
>>> >> >>
>>> >> >> And a place that accepts them as a repository would be nice, to
>>> >> >> keep
>>> >> >> track of all the findings by people all over the world. Something
>>> >> >> like
>>> >> >> github but I'm not sure what the general sentiment on github is. I
>>> >> >> know Cathal uses it for his protocols.
>>> >> >
>>> >> > --
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>>> >>
>>> >>
>>> >>
>>> >> --
>>> >> -Nathan
>>> >
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>>>
>>>
>>> --
>>> -Nathan
>>>
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--
-Nathan

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