Here is an awk that should do it:
awk 'BEGIN{P=1}{if(P==1||P==2){gsub(/^[@]/,">");print}; if(P==4)P=0; P++}' infile.fastq > outfile.fasta &
On Wednesday, March 25, 2015 at 5:58:57 PM UTC-4, phillyj wrote:
-- awk 'BEGIN{P=1}{if(P==1||P==2){gsub(/^[@]/,">");print}; if(P==4)P=0; P++}' infile.fastq > outfile.fasta &
On Wednesday, March 25, 2015 at 5:58:57 PM UTC-4, phillyj wrote:
So, I found that using pip, you can install the .whl file. But I am not sure which versions of which modules work together. So can anyone tell me how to do get this up and running, like which python, numpy, and biopython versions to get and how to install them with the least trouble.Hi guys,I need the help of the software experts. I am not very familiar with installing python and it's modules on windows. I need Biopython to run a FASTQ to FASTA conversion script. I installed Python 2.7 but I can't install the NumPy module needed for Biopython. I get an error (can't remember exact), but I think it has to do with the C compiler needed to install the module.Thanks--In necessariis unitas, in dubiis libertas, in omnibus caritas.
-Marco Antonio Dominis
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