Re: [DIYbio] biopython on windows

On Wed, Mar 25, 2015 at 7:19 PM, Gavin Scott <gavin@learn.bio> wrote:
> Stop right there. Now go get Anaconda (free) which will resolve all
> your Python issues. Comes with Python 2.7, NumPy, Pandas, etc., etc.
> all out of the box, and you can get things like biopython via "conda
> install biopython" in an Anaconda Command Prompt window. No compilers
> or other prerequisites required. Windows/Mac/Linux.
>
This was so helpful. I got the script work. I'll have to make sure the
conversion went well. Thanks so much.


On Thu, Mar 26, 2015 at 11:24 AM, Tom Randall <tarandall@gmail.com> wrote:
>
> Here is an awk that should do it:
>
> awk 'BEGIN{P=1}{if(P==1||P==2){gsub(/^[@]/,">");print}; if(P==4)P=0; P++}' infile.fastq > outfile.fasta &
>
Would be a good solution, except, I'm on Windows. This is mainly for
my colleagues, who are mainly gui-folk, so I'm trying to keep it as
simple as possible.

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