Thanks for the answers,
I already used PFAM earlier on to identify the catabolic domain, which actually was pretty helpful.
I used SPARKSX FOLD Recognition (http://sparks-lab.org/yueyang/server/SPARKS-X/) to gain Pdb models, however I am not quite aware of how trustworthy these predictions are.
I'm going to check out PISA and VMD later on, thanks again for the input ^^
I'm aware of http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html but I think you need a pdb in the database or to provide your own. If you don't have an experimentally proved protien folding have you looked at in silico fold prediction?
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